rs13478812 SNP Detail

Summary

• ID
  rs13478812
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70405235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCA TAACAAAAAA AAAAAAAAAA
  M
  CCCAAAACCT TAACCTTAAC CTAAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss16376740	06.070.518	TWGNF	TWGNF-Mouse-2	f	SNP	C	C		A	A	C		A	A	A	A	C	C	C	C	A	A	A	A	C	A	A	C	C	A	C	A	A	C	C	C	A	A
ss45898465	mCV24084103	ABI	CRAMUS_MOUSE	f	SNP	C	C	A				A								C
ss133272814	ENSMUSSNP4726028	ENSEMBL	ENSEMBL_Sanger	f	SNP															C
ss321814709	CHEV_6_70378245	CHEVERUD	SCREENING_POP	f	SNP																			A										C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs13478812					SNP	C	C	A	A	A	C	A	A	A	A	A	C	C	C	C	A	A	A	A	C	A	A	C	C	A	C	A	A	C	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70405235 () rs orientation: forward

Symbol	Name	Function Class
Gm6157	predicted gene 6157	678 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Tssr61316	transcription start site region 61316	1717 bp downstream