rs13479189 SNP Detail

Summary

• ID
  rs13479189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35284669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGC GCTGCCCTCC GGCGGTACCC
  Y
  ACTTGCAACC TTCAACGTCG TAGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	I/LnJ	JF1/Ms	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PL/J	RIIIS/J	SJL/J	SM/J	ST/bJ	WSB/EiJ
ss16377212	07.025.441	TWGNF	TWGNF-Mouse-2	f	SNP	T	T		T	T	T	T	T	T	T	T	C	C	T	C	C	C	C	C	C	C		T	C	C	C	C	T	T	C		T	T
ss46156394	mCV23682743	ABI	CRAMUS_MOUSE	f	SNP		T	C				T										C
ss148813188	ENSMUSSNP989496	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C														C
ss322157981	CHEV_7_36370263	CHEVERUD	SCREENING_POP	f	SNP																						C									C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	I/LnJ	JF1/Ms	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PL/J	RIIIS/J	SJL/J	SM/J	ST/bJ	WSB/EiJ
rs13479189					SNP	T	T	C	T	T	T	T	T	T	T	T	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35284669 () rs orientation: forward

Symbol	Name	Function Class
Ankrd27	ankyrin repeat domain 27	1000 bp upstream
Cpgi18874	CpG island 18874	within coordinates
Rgs9bp	regulator of G-protein signalling 9 binding protein	within coordinates
Rr167549	regulatory region 167549	within coordinates
Rr400265	regulatory region 400265	785 bp upstream
Tssr65908	transcription start site region 65908	988 bp upstream
Tssr65909	transcription start site region 65909	1051 bp upstream
Tssr72043	transcription start site region 72043	297 bp downstream
Tssr72044	transcription start site region 72044	308 bp downstream
Tssr72045	transcription start site region 72045	333 bp downstream
Tssr72046	transcription start site region 72046	1693 bp downstream