rs13479354 SNP Detail

Summary

• ID
  rs13479354
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:77725438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATC ACCAGGGCAA GCAAATGTCA
  M
  AGAAGGAAGC CAGGCACCCT TGGTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PERA/EiJ	PWD/Ph	PWD/PhJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16377425	07.066.392	TWGNF	TWGNF-Mouse-2	f	SNP	C		A		A	C	C		C	C	C	C	C	A	C	C	C	C	A	C		C	C	A	A	A	A	C	C	A		C	C	C	C	C	C		C
ss46081236	mCV23909612	ABI	CRAMUS_MOUSE	f	SNP	C	A	A					C								C
ss61022933	NES16107673	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	C					C				C	C			C					C		A	C			C							C
ss145115622	ENSMUSSNP1239577	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A													C
ss322274893	CHEV_7_85220576	CHEVERUD	SCREENING_POP	f	SNP																					A													C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PERA/EiJ	PWD/Ph	PWD/PhJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13479354					SNP	C	A	A	A	A	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	A	C	C	A	?	A	A	C	C	A	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61022933	NES16107673	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:77725438 () rs orientation: forward

Symbol	Name	Function Class
Gm53379	predicted gene, 53379	within coordinates
Tssr67298	transcription start site region 67298	1927 bp upstream