rs13479374 SNP Detail

Summary

• ID
  rs13479374
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:83531761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CTGGGTGCCG CCTTCACTTC GCGTACGCAT GCTAACAGCG CGGATGCACT
  W
  GTGCTCATGC ACTTGACGCC CAGCTTGAAC TGTTCGCGAG AGAAGCGGTC           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/2J	DDK/Pas	I/LnJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	RIIIS/J	SEA/GnJ	SEG/Pas	SM/J	WSB/EiJ	ZALENDE/EiJ
ss16377453	07.072.295	TWGNF	TWGNF-Mouse-2	f	SNP		T	A	A	A	A	T	T	T	T	T	T	A	T	A	T	T	T	T	T	T	A	T	T	A	T	T	T
ss46057321	mCV24812017	ABI	CRAMUS_MOUSE	f	SNP	A	T	A				T								A
ss145197755	ENSMUSSNP2060683	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A												A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/2J	DDK/Pas	I/LnJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	RIIIS/J	SEA/GnJ	SEG/Pas	SM/J	WSB/EiJ	ZALENDE/EiJ
rs13479374					SNP	A	T	A	A	A	A	T	T	T	T	T	T	A	T	A	T	T	T	T	T	T	A	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:83531761 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19376	CpG island 19376	within coordinates
Mesd	mesoderm development LRP chaperone	1313 bp upstream
Rr400419	regulatory region 400419	1723 bp upstream
Rr650493	regulatory region 650493	1207 bp proximal
Rr650494	regulatory region 650494	1670 bp proximal
Rr650495	regulatory region 650495	1742 bp proximal
Tlnrd1	talin rod domain containing 1	within coordinates
Tssr2320	transcription start site region 2320	333 bp downstream
Tssr67581	transcription start site region 67581	1069 bp upstream
Tssr67582	transcription start site region 67582	1094 bp upstream
Tssr67583	transcription start site region 67583	1171 bp upstream
Tssr67584	transcription start site region 67584	1304 bp upstream
Tssr73402	transcription start site region 73402	901 bp downstream
Tssr73403	transcription start site region 73403	964 bp downstream
Tssr73404	transcription start site region 73404	1245 bp downstream
Tssr73405	transcription start site region 73405	1601 bp downstream
Tssr73406	transcription start site region 73406	1660 bp downstream
Tssr73407	transcription start site region 73407	1709 bp downstream
Tssr73408	transcription start site region 73408	1736 bp downstream
Tssr73409	transcription start site region 73409	1771 bp downstream