rs13479458 SNP Detail

Summary

• ID
  rs13479458
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110229626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAACTGT GGGTGTTAAA
  AGCTACCGGG GGTGGGGGAC CCGCAAAACG TTCGCACAGC AGCTCTGGGA AACCCTCAGC
  TAGCAGCCCA AGTCTTCACT GGGCCCTGAC GTCCATAAGC GGGGCTGTAG CGCCCCCTGC
  TGGCCACCAT GCGTGCTCCC CCAAAGAGCG GTAGAGTAGT ACGTGCGGTT TAATAAGTTC
  W
  TCTACGTGGG AGTCAGCACA TAGTCTTAAT GAAAGAGGAA AGAAAGGGGG GGAAAAAGCA
  GTTTGCAGAT GCCAACTGGG CTCCCCTCCC TTCGTCTTCT CCCCCCTTCC CCGACCTGCA
  CGCGGGCTTG CTGTGCAGGG GCAGTGACTC AGCGCCCACA CGCTGCGCGG CGAGCAGCTG
  CTGGCCGGAG GCGGGCGGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MAI/Pas	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PWD/Ph	SEA/GnJ	SEG/Pas	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss16377566	07.098.866	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	A	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	T	A	T	T	T	A	T	T	T	A	T	T
ss46106647	mCV23101145	ABI	CRAMUS_MOUSE	f	SNP			A						T										T
ss145645187	ENSMUSSNP4292387	ENSEMBL	ENSEMBL_Sanger	f	SNP			A																T
ss322397535	CHEV_7_117773933	CHEVERUD	SCREENING_POP	f	SNP																									A												T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MAI/Pas	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PWD/Ph	SEA/GnJ	SEG/Pas	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs13479458					SNP	T	T	A	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	T	A	T	T	T	A	T	T	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110229626 () rs orientation: forward

Symbol	Name	Function Class
Adm	adrenomedullin	599 bp downstream
Cpgi19577	CpG island 19577	1147 bp distal
Cpgi19578	CpG island 19578	within coordinates
Gm28863	predicted gene 28863	within coordinates
Gm72687	predicted gene, 72687	197 bp upstream
Rr400547	regulatory region 400547	within coordinates
Rr653271	regulatory region 653271	208 bp distal
Rr653272	regulatory region 653272	within coordinates
Rr653273	regulatory region 653273	53 bp distal
Rr653274	regulatory region 653274	1294 bp proximal
Tssr68501	transcription start site region 68501	1874 bp downstream
Tssr68502	transcription start site region 68502	888 bp downstream