rs13479880 SNP Detail

Summary

• ID
  rs13479880
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:87473757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTT CCTCTGAGAC CATTAGCACA
  M
  CCAAACAGTT GAGAATGTAA ATTAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16378109	08.086.046	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	A	C	C	C	C	A	A	A	A	A	A	C	C	A	A	C	A	A	C	A	A	C	A	C	C	A	C	C	C	A	C	A	A	A	C	C	C	C	C	A	A	C	A	C	C	C
ss46166692	mCV23459977	ABI	CRAMUS_MOUSE	f	SNP		C	A						A											A
ss145430767	ENSMUSSNP4827685	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A																	A
ss322759621	CHEV_8_89271028	CHEVERUD	SCREENING_POP	f	SNP																										C																	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13479880					SNP	C	C	A	C	C	C	C	A	A	A	A	A	A	C	C	A	A	C	A	A	C	A	A	C	A	C	C	A	C	C	C	A	C	A	A	A	C	C	C	C	C	A	A	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:87473757 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20765	CpG island 20765	347 bp distal
Gm10638	predicted gene 10638	69 bp downstream
Gm63869	predicted gene, 63869	1710 bp upstream
Rr666882	regulatory region 666882	1721 bp distal
Rr666883	regulatory region 666883	1666 bp distal
Rr666884	regulatory region 666884	1206 bp distal
Rr666885	regulatory region 666885	705 bp distal
Siah1a	siah E3 ubiquitin protein ligase 1A	1195 bp upstream
Tssr78572	transcription start site region 78572	1657 bp downstream
Tssr78573	transcription start site region 78573	1614 bp downstream
Tssr78574	transcription start site region 78574	1575 bp downstream
Tssr78575	transcription start site region 78575	1528 bp downstream
Tssr78576	transcription start site region 78576	1497 bp downstream
Tssr78577	transcription start site region 78577	1469 bp downstream
Tssr78578	transcription start site region 78578	1445 bp downstream
Tssr82293	transcription start site region 82293	1075 bp upstream
Tssr82294	transcription start site region 82294	1006 bp upstream