rs13479929 SNP Detail

Summary

• ID
  rs13479929
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95160502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGA CAAGAGGCAG GGCAGGTTGT
  R
  GAACTTGGAA CAGAGACAGG AACTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16378168	08.093.800	TWGNF	TWGNF-Mouse-2	f	SNP	A	G	G	A	G	A	A	G	A	G	A	G	G	A	A	G	G	A	G	G	G	G	G	G	G	G	A	A	A	A	A	A	G	A	A	G	A	A		G	G	A	A	G	A	A	A	A	A
ss46191612	mCV24117616	ABI	CRAMUS_MOUSE	f	SNP	A	G	G						A											G
ss47624900	NES11428545	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A		G							A					G					G					A					A				A									A
ss145631287	ENSMUSSNP3725256	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G																	G
ss322808032	CHEV_8_96957774	CHEVERUD	SCREENING_POP	f	SNP																										G																		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13479929					SNP	A	G	G	A	G	A	A	G	A	G	A	G	G	A	A	G	G	A	G	G	G	G	G	G	G	G	A	A	A	A	A	A	G	A	A	G	A	A	A	G	G	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624900	NES11428545	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95160502 () rs orientation: forward

Symbol	Name	Function Class
9330175E14Rik	RIKEN cDNA 9330175E14 gene	within coordinates
Cpgi20846	CpG island 20846	within coordinates
Nlrc5	NLR family, CARD domain containing 5	482 bp upstream
Rr401062	regulatory region 401062	308 bp upstream
Rr667981	regulatory region 667981	within coordinates
Rr667982	regulatory region 667982	313 bp proximal
Rr667983	regulatory region 667983	528 bp proximal
Tssr78863	transcription start site region 78863	469 bp upstream
Tssr78864	transcription start site region 78864	504 bp upstream
Tssr78865	transcription start site region 78865	849 bp upstream
Tssr82495	transcription start site region 82495	268 bp downstream
Tssr82496	transcription start site region 82496	385 bp downstream