rs13480169 SNP Detail

Summary

• ID
  rs13480169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45343743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGC ACCCACCCCC ACCCAGGAGC
  R
  CTGCATTAAT AAATGAAGCC CCAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16378456	09.045.480	TWGNF	TWGNF-Mouse-2	f	SNP	G	G	A	A	A	G	A	A	G	G	G	G	G	G	G	A	A	G	A	A	G	A	G	G	G	G	G	A	G	G	G	A	G	A	A	G	A	G	G	A	G	G	G	G	A	A	G	G
ss46411844	mCV23102204	ABI	CRAMUS_MOUSE	f	SNP	G	G	A						G											A
ss136411730	ENSMUSSNP2987654	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A																	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13480169					SNP	G	G	A	A	A	G	A	A	G	G	G	G	G	G	G	A	A	G	A	A	G	A	G	G	G	G	G	A	G	G	G	A	G	A	A	G	A	G	G	A	G	G	G	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45343743 () rs orientation: forward

Symbol	Name	Function Class
4833428L15Rik	RIKEN cDNA 4833428L15 gene	1213 bp upstream
Cpgi21692	CpG island 21692	803 bp distal
Dscaml1	DS cell adhesion molecule like 1	within coordinates
Rr383299	regulatory region 383299	402 bp downstream
Tssr84801	transcription start site region 84801	1106 bp downstream
Tssr84802	transcription start site region 84802	1079 bp downstream