rs13480170 SNP Detail

Summary

• ID
  rs13480170
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45818614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGAGGAGG TCCTTCGCTG
  AGGGCACCTT GGGTCCTGGC GTGGGCGACC CCAGAGGGAC CGGGTCTCCG GGTCGTAGGT
  TCCGGACAGC ATCGGTCCTA AGGAGAGAGA GGCACATTGC ACGGAGCAGC TGAGTCCGCG
  TGGGAGTGGG GGCATCAGAA AACTCACTCT GTACAGACCC TGGTTCCTGT GAGTGGGGAG
  R
  CGGGGCTTGA AGGACGGTGG TTTAAGAGCA GAATCTTGAG CAGGAAAGGT GCCCGTCTAC
  CTTAGTTGAG GGTGATGGGA GTCTATTTTC AGAAAGTGCT TAAGATTTCT TGCTCAGAGG
  TCTGAGAATA AGTGCTGCTG TGCCTCTGGA CCACAGGGAG AAAAAAACAA ACAAACAAAC
  AAAACAAAAC AAAAACAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss16378458	09.045.956	TWGNF	TWGNF-Mouse-2	f	SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	A	G	G	A	A	G	A	G	A	A	A	G	G	G	G	G	G	A	G	G	A	G	G	A	G	G	G
ss46375946	mCV25171705	ABI	CRAMUS_MOUSE	f	SNP		A	G																	G
ss136420516	ENSMUSSNP2682599	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G																	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs13480170					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	A	G	G	A	A	G	A	G	A	A	A	G	G	G	G	G	G	A	G	G	A	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45818614 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21697	CpG island 21697	within coordinates
Pcsk7	proprotein convertase subtilisin/kexin type 7	within coordinates
Rnf214	ring finger protein 214	405 bp upstream
Rr677992	regulatory region 677992	920 bp distal
Rr677993	regulatory region 677993	809 bp distal
Rr677994	regulatory region 677994	854 bp distal
Rr677995	regulatory region 677995	458 bp distal
Rr677996	regulatory region 677996	786 bp distal
Rr677997	regulatory region 677997	321 bp distal
Rr677998	regulatory region 677998	within coordinates
Rr677999	regulatory region 677999	342 bp proximal
Tssr84815	transcription start site region 84815	764 bp downstream
Tssr84816	transcription start site region 84816	303 bp downstream
Tssr89273	transcription start site region 89273	879 bp upstream
Tssr89274	transcription start site region 89274	422 bp upstream
Tssr89275	transcription start site region 89275	395 bp upstream
Tssr89276	transcription start site region 89276	269 bp downstream