rs13480171 SNP Detail

Summary

• ID
  rs13480171
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46037701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTTAAGG TCATTTTAAG
  GTAAAAATTG AAACAGTCTA AAATGTTTTT ATGATCATTG AAAGGATAAT GTTCTGGGAA
  CATTGAGGTA AATGTTGACT GTTGTTTCTG ACTTCTGTTT TAAATCGTGG CCTTATATAA
  CATGGGGGCT GCAGCTCAGT TGTGTCATCC TAGCATCCTC AGGGAGCTGC CCAGTGCTCA
  S
  CCTGTCTCTG TGAGAATGAA GGTAGATGGG GGCAGAAGCC TTTGGCCTTC AGTTTCTGCA
  CCAGTGATCC TGACAAAGTC ATGCATGACA TACAGGGTTT GGAAAAAAGG GAAACAGCAC
  TGACTGTGGA CTTTTAAAAA GTTACAAAAC AGACTGCAGA CTGGACAAAG TACAGCTGGA
  TTGCATTATT GAAAGGCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss16378459	09.046.175	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	G		G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	C	C	G	C	G	C	C	C	G	G	G	G	G	G	C		G	G	C	G	G	C	G	G	G
ss46301764	mCV25177535	ABI	CRAMUS_MOUSE	f	SNP	C	C	G						G											G
ss47696246	NES11312336	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G		G							G					G		G			C					C		G			G				C									G
ss136423304	ENSMUSSNP6871856	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G																	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs13480171					SNP	C	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	C	C	G	C	G	C	C	C	G	G	G	G	G	G	C	C	G	G	C	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47696246	NES11312336	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46037701 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	within coordinates
Rr678057	regulatory region 678057	1016 bp proximal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	830 bp upstream