rs13480213 SNP Detail

Summary

• ID
  rs13480213
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56326852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTTAACTG AGTGAAGTAG TGTAGGCTCT ACCTAGACAC
  GGAACAGGAG CTCCTTAGCC GCTCTTTTAA GGAGGTAGTT TATAAGTTAG AGTACCGAAT
  W
  GTTCACACAA ATTACAGGGC ATTTTCATGT TTGCAGAGGG AGAGAGTGTC ATGCTGCAGT
  ACTCCGATTT GATGTTACCG TAATAAAGGG CACTAATGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16378509	09.056.576	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	T	T	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A
ss46299919	mCV25229850	ABI	CRAMUS_MOUSE	f	SNP		T	A					A										T
ss136514594	ENSMUSSNP1059642	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A															T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13480213					SNP	T	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	T	T	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56326852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21795	CpG island 21795	736 bp distal
Hmg20a	high mobility group 20A	within coordinates
Peak1	pseudopodium-enriched atypical kinase 1	1501 bp upstream
Rr206471	regulatory region 206471	within coordinates
Rr368756	regulatory region 368756	885 bp downstream
Rr368757	regulatory region 368757	368 bp downstream
Rr401386	regulatory region 401386	1256 bp downstream
Tssr85252	transcription start site region 85252	1169 bp downstream
Tssr85253	transcription start site region 85253	1143 bp downstream
Tssr85254	transcription start site region 85254	887 bp downstream
Tssr85255	transcription start site region 85255	859 bp downstream
Tssr85256	transcription start site region 85256	721 bp downstream
Tssr85257	transcription start site region 85257	694 bp downstream
Tssr85258	transcription start site region 85258	79 bp downstream
Tssr89707	transcription start site region 89707	1516 bp upstream
Tssr89708	transcription start site region 89708	1487 bp upstream
Tssr89709	transcription start site region 89709	1458 bp upstream
Tssr89710	transcription start site region 89710	722 bp upstream
Tssr89711	transcription start site region 89711	605 bp upstream