rs13480227 SNP Detail

Summary

• ID
  rs13480227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:60958085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTCTC TCTCTCTCTC
  TCACACACAC ACACACAGAA TTTAAAAATA TTTTTAAAAT ATTTAACAAA CATCAAAACC
  AAACCCTGTT TTCCCTTCTG AGACTTCAGC CCCCATCCAC ATTCTTACCA TAACGTCTAT
  GAGAAAGAGG TGGGAACTGG CTTGTGTTTA TGCACATGTA TGCATATTCA TGCCCGTAAG
  R
  GATACGTGTC TAAAAGAATA CAGAGAGAAT GAACCAGTAA ACAGAGGTGG TGGGGTGGGG
  TAGGAAACAC TACCATGGGA ATAAAACTTC TTTAGGCAGG ATTTTTAATA CTGTTTTGTG
  TTCTGAATCA TTCGTACATA ATTTGTACAT GATTTACATG TTCAAAAAAT TAATCAAATC
  AAATGAAAAT TAGGAAAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16378529	09.061.231	TWGNF	TWGNF-Mouse-2	f	SNP	A	A	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	A	A	A	G	A	G	G	A	G	G	G	A	G	A	A	G	G	G	A
ss46299154	mCV25242623	ABI	CRAMUS_MOUSE	f	SNP	A	A	G																G
ss136536950	ENSMUSSNP1081344	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G																G
ss322978066	CHEV_9_60898610	CHEVERUD	SCREENING_POP	f	SNP																							G														A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13480227					SNP	A	A	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	A	A	A	G	A	G	G	A	G	G	G	A	G	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:60958085 () rs orientation: forward

Symbol	Name	Function Class
Gm33699	predicted gene, 33699	within coordinates
Gm39348	predicted gene, 39348	596 bp downstream
Rr680430	regulatory region 680430	1870 bp proximal