rs13480415 SNP Detail

Summary

• ID
  rs13480415
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:110076215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGG GCCTGGGACA GGACAGCCCA
  M
  CAACCGGTGG CATGCTGTTC CCCCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss16378765	09.110.354	TWGNF	TWGNF-Mouse-2	f	SNP	A	A	A	A	A	C	A	A	C	C	C	C	C	C	C	C	C	C	A	A	C	C	A	C	A	A	A	C	C	C	A	A	C	C	C	A	C	A	A	C	C	A	C	A	C	C
ss46377393	mCV23790837	ABI	CRAMUS_MOUSE	f	SNP		A	A						C
ss136958381	ENSMUSSNP3403508	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss323193635	CHEV_9_110149651	CHEVERUD	SCREENING_POP	f	SNP																									A																	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs13480415					SNP	A	A	A	A	A	C	A	A	C	C	C	C	C	C	C	C	C	C	A	A	C	C	A	C	A	A	A	C	C	C	A	A	C	C	C	A	C	A	A	C	C	A	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110076215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22373	CpG island 22373	569 bp distal
Cspg5	chondroitin sulfate proteoglycan 5	Coding-NonSynonymous
Rr383903	regulatory region 383903	1837 bp upstream
Rr687076	regulatory region 687076	1606 bp distal
Rr687077	regulatory region 687077	1072 bp distal
Tssr87334	transcription start site region 87334	1957 bp downstream
Tssr87335	transcription start site region 87335	1730 bp downstream
Tssr87336	transcription start site region 87336	1656 bp downstream
Tssr87337	transcription start site region 87337	1629 bp downstream
Tssr87338	transcription start site region 87338	911 bp downstream
Tssr87339	transcription start site region 87339	113 bp upstream