rs13480478 SNP Detail

Summary

• ID
  rs13480478
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:7208363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTCTTTC ACTTTCCCGT
  TTCTTCCCAT GGCCCAGCCT CTCACTTAGA GTATAAATGA TGTGGGAAGC AGGGAGACTA
  TCAGTGTCTG TGGTCCATGA AAGCCCCACA TTTTAACTGT GCTGTTCCAC ATATACTTGT
  AACACCATCC TGGCATCCTT GCATTGATGT GCTGGCCTAG CATAGCAACA ACTTCTGATC
  M
  TGTCTGTACC TGTTCCCAGG CAGATTATTC TATTCCAATT CCATAGCTAT AGTTTGGATT
  GTTTTTTTTT TTTATAATTT TCATAATATT ATTCAATTGA CCCCTTTACC TTTTCCCCAT
  CATGGCAAAA GACCCAAGGT GGGTCAAATA CCCAGCAAAG TTCAGATGAT GCCATTCATA
  CGCAAGCTTG CCATGCCCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16378853	10.007.111	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	C	C	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	A	A	A	A	A	A	A	A	C	A		A	A	A	C	C	A	A	A	A	A
ss38605328	mCV25378360	ABI	CRAMUS_MOUSE	f	SNP		C	C						A											A
ss52047060	NES15060607	PERLEGEN	MM_PANEL2	r	SNP	G		G	G	G	G		T							T					T		T			T					T		T			T				T									T
ss146638871	ENSMUSSNP768152	ENSEMBL	ENSEMBL_Sanger	r	SNP			G																	T
ss323236203	CHEV_10_3088178	CHEVERUD	SCREENING_POP	r	SNP																										G																		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13480478					SNP	C	C	C	C	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	C	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52047060	NES15060607	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:7208363 () rs orientation: forward

Symbol	Name	Function Class
Rr220267	regulatory region 220267	1838 bp proximal