rs13480824 SNP Detail

Summary

• ID
  rs13480824
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127920524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA CTTGCTACAT AGAACCCCCT
  R
  TTACTTTTTT TAAAGCTGTG TTACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16379260	10.128.110	TWGNF	TWGNF-Mouse-2	f	SNP	A	A	A	A	A		G	G	G	G	G	G	A	A	A	A		G	A	G	G	A	G	A	A	A	G	A	A	A	A		G	G	A	A	A	A	A	A	G
ss38621549	mCV22823235	ABI	CRAMUS_MOUSE	f	SNP		A	A					G									G
ss50944585	NES14144980	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	G							A			G		A		G				A		G			A		A
ss147737907	ENSMUSSNP705575	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A														G
ss323531636	CHEV_10_127521711	CHEVERUD	SCREENING_POP	f	SNP																						A														A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13480824					SNP	A	A	A	A	A	G	G	G	G	G	G	G	A	A	A	A	G	G	A	G	G	A	G	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50944585	NES14144980	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127920524 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1b	ATP synthase F1 subunit beta	within coordinates
Cpgi2382	CpG island 2382	508 bp distal
Gm47438	predicted gene, 47438	1472 bp upstream
Gm55458	predicted gene, 55458	634 bp upstream
Mir677	microRNA 677	631 bp upstream
Rr402340	regulatory region 402340	1343 bp downstream
Rr441096	regulatory region 441096	1596 bp distal
Rr441097	regulatory region 441097	1372 bp distal
Rr441098	regulatory region 441098	1814 bp proximal
Rr441099	regulatory region 441099	1914 bp proximal
Snord59a	small nucleolar RNA, C/D box 59A	439 bp downstream
Tssr96319	transcription start site region 96319	1346 bp downstream
Tssr96320	transcription start site region 96320	717 bp downstream
Tssr96321	transcription start site region 96321	670 bp downstream
Tssr96322	transcription start site region 96322	855 bp upstream
Tssr96323	transcription start site region 96323	1376 bp upstream
Tssr96324	transcription start site region 96324	1477 bp upstream
Tssr96325	transcription start site region 96325	1637 bp upstream
Tssr96326	transcription start site region 96326	1654 bp upstream
Tssr96327	transcription start site region 96327	1670 bp upstream
Tssr96328	transcription start site region 96328	1717 bp upstream
Tssr99834	transcription start site region 99834	1674 bp upstream