rs13480834 SNP Detail

Summary

• ID
  rs13480834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3073930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGGAACGGCG CGGGGGGGGA AAAGCAGAGA CAGGAACCTG GGGCTGACAG CATCGACGGG
  TGATGGGCGG GGCCTGCGGC GGCTGCAGTC TTCTGCCCGC AGCGCCCCTC CGGATGAGGT
  CCCCGCCCAC CGCGCAGCGT GGACCTAAAA CCTCTGCATT CCTTTATTGA GGGGGAAAAA
  GCCTCAGACG CTGCCTCTGT CAGTTACGGG CAGAGGTGGT AGGGGAAAGA AATCCAGTCT
  CCCATTGGAA GCCTCTGCCA GTCACGGCTG GGCGGGCGGG ACTTCTGGCA CTGTTCCCTG
  Y
  TCCTGGAAAC AGGGAGTGGA GAAGCTTCTC GATTGGAAGC CGCTGTCGTC AATTGTGGCC
  GAGCGGGCGG GACTTCCTGC CAAGCCCCCC AGAGTCTCTC TGCTGCCGCC GCAAGCGCCG
  CTGGCCCGGG GACCACAGAT TGGAAGCAGG CAGTCACTGG TCGTGGACAG GAAGACTCTC
  TCCGGCCATC TCAGGTCAGT GCAGGCTCGG GCATGCCCCT GCCTCAGCCC CGAGGCATGC
  TGGGAGTTGT AGTTCTGTCC TGGCTTTGGT TCCTCTGAGC CCCGCCCCCC ATTTTTTTCT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	MA/MyJ	MAI/Pas	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16379271	11.003.002i	TWGNF	TWGNF-Mouse-2	f	SNP	T	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	T	T	C	T	C	T	C	C	C	C	C	C	C	T	T	T	C
ss38665907	mCV23826164	ABI	CRAMUS_MOUSE	f	SNP	T		T						C											C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	MA/MyJ	MAI/Pas	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13480834					SNP	T	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	T	T	C	T	C	T	C	C	C	C	C	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3073930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	within coordinates
Gm74511	predicted gene, 74511	within coordinates
Rr369110	regulatory region 369110	within coordinates
Rr441449	regulatory region 441449	1186 bp distal
Rr441450	regulatory region 441450	within coordinates
Rr441451	regulatory region 441451	583 bp distal
Rr441452	regulatory region 441452	424 bp distal
Rr441453	regulatory region 441453	102 bp proximal
Rr441454	regulatory region 441454	494 bp proximal
Rr441455	regulatory region 441455	717 bp proximal
Rr441456	regulatory region 441456	1533 bp proximal
Tssr100004	transcription start site region 100004	69 bp upstream
Tssr100005	transcription start site region 100005	113 bp upstream
Tssr106442	transcription start site region 106442	10 bp upstream