rs13480835 SNP Detail

Summary

• ID
  rs13480835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:3284213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA TAAATCATTA CAGAAGAAAA
  Y
  CCATTTGCCA CTCCTTACAA GATAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16379272	11.003.209	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	T	T	T	T	T	C	C	T	C	C	C	T	T	C	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T		T	T	C	C	T	T	T	T
ss37112502	NES08505089	PERLEGEN	MM_PANEL2	f	SNP				T				C												C		T			T					T		T							T
ss38853983	mCV22779828	ABI	CRAMUS_MOUSE	f	SNP	T	T	T						C											C
ss131630294	ENSMUSSNP7039227	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T																	C
ss323547039	CHEV_11_3234216	CHEVERUD	SCREENING_POP	f	SNP																										T																	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13480835					SNP	T	T	T	T	T	T	T	C	C	T	C	C	C	T	T	C	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37112502	NES08505089	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3284213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2477	CpG island 2477	1493 bp distal
Gm74265	predicted gene, 74265	within coordinates
Pik3ip1	phosphoinositide-3-kinase interacting protein 1	Intron
Rr402384	regulatory region 402384	1657 bp downstream
Rr402385	regulatory region 402385	1633 bp upstream
Rr441529	regulatory region 441529	1894 bp distal
Rr441530	regulatory region 441530	484 bp proximal
Rr441531	regulatory region 441531	1224 bp proximal
Tssr3406	transcription start site region 3406	1725 bp downstream
Tssr100049	transcription start site region 100049	1753 bp downstream
Tssr100050	transcription start site region 100050	1729 bp downstream
Tssr100051	transcription start site region 100051	1702 bp downstream
Tssr106460	transcription start site region 106460	1937 bp upstream
Tssr106461	transcription start site region 106461	1912 bp upstream
Tssr106462	transcription start site region 106462	35 bp downstream
Tssr106463	transcription start site region 106463	1599 bp downstream