rs13480871 SNP Detail

Summary

• ID
  rs13480871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:11507490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGT GTTCACAGTT CCTTGGTGAC
  R
  GAATTAAACG GTGCCTTCCT ACCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss16379313	11.011.634	TWGNF	TWGNF-Mouse-2	f	SNP	A		G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	A	A	A	G	A	A	G	G	G	G	A	G	A	G	G	A	G	A	G	G	G	A		G	A	A
ss38715458	mCV24438534	ABI	CRAMUS_MOUSE	f	SNP		A	G						G											A
ss131686842	ENSMUSSNP5609773	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G																	A
ss323561266	CHEV_11_11457493	CHEVERUD	SCREENING_POP	f	SNP																									G															A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs13480871					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	A	A	A	G	A	A	G	G	G	G	A	G	A	G	G	A	G	A	G	G	G	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:11507490 () rs orientation: forward

Symbol	Name	Function Class
Gm11998	predicted gene 11998	within coordinates
Gm29945	predicted gene, 29945	within coordinates
Rr402417	regulatory region 402417	5 bp downstream
Tssr100349	transcription start site region 100349	92 bp downstream
Tssr100350	transcription start site region 100350	59 bp downstream
Tssr100351	transcription start site region 100351	442 bp upstream
Tssr100352	transcription start site region 100352	517 bp upstream