rs13481035 SNP Detail

Summary

• ID
  rs13481035
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:55041963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCT TAGGAGCTGG GCTTCAGATA
  Y
  ATTTACCCTG GAATGGCGAT GGGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16379523	11.055.748	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	T	C	C	T	T	T	C	C	C	C	C	C	T	C	C	T	C	T	T	C	C	C	T	T	T	C	C	C	T	T	C	C	C	C	C		T	C	T	C	C	T	T		C
ss37205592	NES08432525	PERLEGEN	MM_PANEL2	f	SNP	T			C	C	T		T						C					C		T			C					C		T			C				C								C
ss38660561	mCV24424090	ABI	CRAMUS_MOUSE	f	SNP		T	T						C										C
ss132144690	ENSMUSSNP3290990	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T																C
ss323675230	CHEV_11_54964639	CHEVERUD	SCREENING_POP	f	SNP																									T																	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13481035					SNP	T	T	T	C	C	T	T	T	C	C	C	C	C	C	T	C	C	T	C	T	T	C	C	C	T	T	T	C	C	C	T	T	C	C	C	C	C	C	T	C	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37205592	NES08432525	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:55041963 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm31688	predicted gene, 31688			within coordinates
Slc36a3	solute carrier family 36 (proton/amino acid symporter), member 3			Intron
				Splice-Site
Tssr108046	transcription start site region 108046			542 bp downstream
Tssr108047	transcription start site region 108047			561 bp downstream
Tssr108048	transcription start site region 108048			566 bp downstream