rs13481044 SNP Detail

Summary

• ID
  rs13481044
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57722100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTT TTCCGCTTGC TTTCGCGACC
  R
  CCATCCGTCT TTTTGAGTTC AGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16379537	11.058.458	TWGNF	TWGNF-Mouse-2	f	SNP	G	G	G	G	G	G	G	G	A	A	A	G	G	A	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G
ss38729094	mCV23860831	ABI	CRAMUS_MOUSE	f	SNP			G						A
ss132181308	ENSMUSSNP2497942	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss323685770	CHEV_11_57644776	CHEVERUD	SCREENING_POP	f	SNP																										G																	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13481044					SNP	G	G	G	G	G	G	G	G	A	A	A	G	G	A	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57722100 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2911	CpG island 2911	1532 bp distal
Cpgi2912	CpG island 2912	within coordinates
Cpgi2913	CpG island 2913	1408 bp proximal
Gm32915	predicted gene, 32915	834 bp upstream
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447813	regulatory region 447813	1790 bp distal
Rr447814	regulatory region 447814	527 bp distal
Rr447815	regulatory region 447815	863 bp proximal
Rr447816	regulatory region 447816	1534 bp proximal
Tssr101646	transcription start site region 101646	412 bp upstream
Tssr101647	transcription start site region 101647	420 bp upstream
Tssr101648	transcription start site region 101648	433 bp upstream
Tssr108127	transcription start site region 108127	1961 bp upstream
Tssr108128	transcription start site region 108128	1949 bp upstream
Tssr108129	transcription start site region 108129	1814 bp upstream
Tssr108130	transcription start site region 108130	489 bp downstream
Tssr108131	transcription start site region 108131	730 bp downstream
Tssr108132	transcription start site region 108132	810 bp downstream
Tssr108133	transcription start site region 108133	868 bp downstream
Tssr108134	transcription start site region 108134	1405 bp downstream