rs13481087 SNP Detail

Summary

• ID
  rs13481087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69492735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG CCTTCTAACT CCACCATCAA
  Y
  CCCCAAGTTC TTACCCCGTC CTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16379593	11.070.261	TWGNF	TWGNF-Mouse-2	f	SNP	T		C	T	T	T	C	T	T	T	C	T	T	T	C	T	C	C	C	C	T	T	C	C	C	T	T	T	C	C	C	T	C	T	C	C	T	C	T	C	C	T	C	C	T	T	T	T
ss38859137	mCV23357650	ABI	CRAMUS_MOUSE	f	SNP		T	C																	C
ss132359152	ENSMUSSNP6833842	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C																	C
ss323730640	CHEV_11_69415411	CHEVERUD	SCREENING_POP	f	SNP																										T																	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13481087					SNP	T	T	C	T	T	T	C	T	T	T	C	T	T	T	C	T	C	C	C	C	T	T	C	C	C	T	T	T	C	C	C	T	C	T	C	C	T	C	T	C	C	T	C	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69492735 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	453 bp downstream
Rr450035	regulatory region 450035	1247 bp distal
Tssr3544	transcription start site region 3544	1205 bp upstream
Tssr102487	transcription start site region 102487	1869 bp downstream
Tssr102488	transcription start site region 102488	706 bp downstream
Tssr102489	transcription start site region 102489	660 bp downstream
Tssr108712	transcription start site region 108712	1891 bp upstream
Tssr108713	transcription start site region 108713	1740 bp upstream
Tssr108714	transcription start site region 108714	1672 bp upstream
Tssr108715	transcription start site region 108715	1638 bp upstream
Tssr108716	transcription start site region 108716	1334 bp upstream
Tssr108717	transcription start site region 108717	1320 bp upstream
Tssr108718	transcription start site region 108718	1256 bp upstream
Tssr108719	transcription start site region 108719	1254 bp upstream
Tssr108720	transcription start site region 108720	1238 bp upstream
Tssr108721	transcription start site region 108721	1229 bp upstream
Tssr108722	transcription start site region 108722	1151 bp upstream
Tssr108723	transcription start site region 108723	1114 bp upstream
Tssr108724	transcription start site region 108724	1068 bp upstream
Tssr108725	transcription start site region 108725	1046 bp upstream
Tssr108726	transcription start site region 108726	944 bp upstream
Tssr108727	transcription start site region 108727	923 bp upstream
Tssr108728	transcription start site region 108728	879 bp upstream
Tssr108729	transcription start site region 108729	794 bp upstream
Tssr108730	transcription start site region 108730	762 bp upstream
Tssr108731	transcription start site region 108731	720 bp upstream
Tssr108732	transcription start site region 108732	659 bp upstream
Tssr108733	transcription start site region 108733	543 bp downstream
Tssr108734	transcription start site region 108734	834 bp downstream
Tssr108735	transcription start site region 108735	901 bp downstream
Tssr108736	transcription start site region 108736	939 bp downstream
Tssr108737	transcription start site region 108737	1629 bp downstream