rs13481128 SNP Detail

Summary

• ID
  rs13481128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83599260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTG GGGACAAGAG ATTCTGCATG
  Y
  TCTCCTATGG CTCTCATCCT TCCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16379649	11.084.484	TWGNF	TWGNF-Mouse-2	f	SNP	T	C	T	T	C	T	T	T	C	C	T	C	C	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	C	C	C	C	T	T	T	T	T	C	T	T	C	C	C
ss37141033	NES08459478	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	T		T							T					T		C			T						C			C										C
ss38779709	mCV23453943	ABI	CRAMUS_MOUSE	f	SNP	T	C	T						C											T
ss132473445	ENSMUSSNP4341438	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T																	T
ss323768115	CHEV_11_83521936	CHEVERUD	SCREENING_POP	f	SNP																										T															T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13481128					SNP	T	C	T	T	C	T	T	T	C	C	T	C	C	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	C	C	C	C	T	T	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37141033	NES08459478	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83599260 () rs orientation: forward

Symbol	Name	Function Class
D11Mit119	DNA segment, Chr 11, Massachusetts Institute of Technology 119	658 bp distal
Tssr103748	transcription start site region 103748	659 bp upstream
Tssr103749	transcription start site region 103749	667 bp upstream
Wfdc18	WAP four-disulfide core domain 18	581 bp upstream