rs13481210 SNP Detail

Summary

• ID
  rs13481210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106203708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTCACAT TTCTGCTTGC
  AGAAGTAGAT ACCATTATCC TCGTACTGGA TGTTTTGGAT AGTGAGGGTG TAGACAGAGC
  CATTCTGGGT CTGCACAATG CGTCCCTCTT CTGAGACCAG TTCCTGGGGC TGCTGGCTCC
  CTCGCTTTCG GAACCAGGTC AGTGCACCTG AGTGGTTTGT GTAGCAGTGA AACTTCACCA
  Y
  GGAGCTCCGC TTTTTGGCTG CAAACCTCGG GTGCTGCCAG ATCTGGGAAC AAGGGCTTCC
  TGCGGACATA TCAGGGCAAG GTTCAAAATC AGGCTTAGCG TCTTCCTGTA GCCTATCTCA
  CGTGTCTGGG GCATCAGGTT CATGAGGCAG TCAGTAGAGG TATGAGAAGG TAAAGTCTGT
  GAGAGGCCTC ATACTAAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16379759	11.107.157	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	C	T	T	T	T	C	T	C	T	C	T	T	C	T	C		T	T	C	T	C	C	C	T	C	C
ss37271365	NES08545326	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T		T							C					T		T			T					T		T			T				C									C
ss38697115	mCV24365229	ABI	CRAMUS_MOUSE	f	SNP	T	T	C						T											T
ss132766224	ENSMUSSNP4023581	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C																	T
ss323838830	CHEV_11_106174196	CHEVERUD	SCREENING_POP	f	SNP																										T																		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13481210					SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	C	T	T	T	T	C	T	C	T	C	T	T	C	T	C	C	T	T	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271365	NES08545326	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106203708 () rs orientation: forward

Symbol	Name	Function Class
Cd79b	CD79B antigen	within coordinates
Cpgi4022	CpG island 4022	1471 bp proximal
Rr386632	regulatory region 386632	within coordinates
Tssr111335	transcription start site region 111335	825 bp downstream
Tssr111336	transcription start site region 111336	1612 bp downstream