rs13481652 SNP Detail

Summary

• ID
  rs13481652
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111450975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACT CACAGCACAC ATGCACACAA
  Y
  GAAACTTTTT TTTTAAAAGT AAAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16380313	12.105.533	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	T	T	C	C	T	T	C	C	C	C	C	C	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	C	T	C	C	T	T
ss38877587	mCV23145573	ABI	CRAMUS_MOUSE	f	SNP		C	T						C											T
ss138695686	ENSMUSSNP1026754	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T																	T
ss324159646	CHEV_12_112722752	CHEVERUD	SCREENING_POP	f	SNP																										T																	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13481652					SNP	C	C	T	T	C	C	T	T	C	C	C	C	C	C	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111450975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5148	CpG island 5148	475 bp proximal
Gm266	predicted gene 266	68 bp downstream
Gm40578	predicted gene, 40578	within coordinates
Gm56529	predicted gene, 56529	within coordinates
Rr473191	regulatory region 473191	1272 bp proximal
Tssr117821	transcription start site region 117821	1232 bp downstream
Tssr117822	transcription start site region 117822	1267 bp downstream
Tssr117823	transcription start site region 117823	1435 bp downstream
Tssr117824	transcription start site region 117824	1547 bp downstream