rs13481736 SNP Detail

Summary

• ID
  rs13481736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:29228226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCATTTCT TCTTAACCGA
  AATTTAACAA ACAAACAAAA CACCAAAAAC TTGAGACACA TGTAACTTGT ATGGCTGCCC
  GAAGGAAGAA AGAAGAGAAT GCCTAACAGA AGCCAGGCAG CTGCCTTCCT GTGTATGGAG
  AGGTTTCACA GAGAGAAAGT CATTCAGCTA GACGCTTGTT ATGTAGCTAG TCCTGAAACA
  Y
  CAGGGCCCCT TCTGGGGAGC TTAGTCTCTT CAATAAATGA GTTTAGAAAT GGTCAAAATC
  AGAAGCCCAT GGACAATTTT TTTTTTTTTT TTTAGAGTTT AAAAGAAAAA TTCCAGGGCA
  GGCAAGCTGT AAACCTCAGT AGCTGCCCAG AGGAGGAGAA AGGGGAAAAG GACCAAAAAG
  GCCACAGCAG TTGAGTTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16380420	13.028.490	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	T	T	C	C	C	T	T	T	C	C	T	C	T	C	T	C	T	T	C	C	T	C	C	T	T
ss39071882	mCV23273755	ABI	CRAMUS_MOUSE	f	SNP	T	T	C						C											C
ss49093203	NES12399920	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C		C												C		C										C			C
ss148820532	ENSMUSSNP2010054	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C																	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13481736					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	T	T	C	C	C	T	T	T	C	C	T	C	T	C	T	C	T	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49093203	NES12399920	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:29228226 () rs orientation: forward

Symbol	Name	Function Class
Rr388183	regulatory region 388183	within coordinates