rs13481890 SNP Detail

Summary

• ID
  rs13481890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:77194690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATTTTGT CTTTACTTTC
  TCATTATATT TTATATAAAA TAAAAGCACC TTTTCTTACA GACTTTTCAA TATAAAATAT
  TATCTGCCTC TGAGGAAGTC ATCAAAAACC TAGATAATTT CCCGAAAGCC CTGTAACAGG
  AACGCACTCA CCCCCACGCT GTAGAAGCAG CTTGCCAATC TCCACATGTC CGTTTGACAG
  Y
  GCATCATGCA AAGGCGTCAC CCCGTCCACT TGAGTGAGCA GATCCACCTC TGGACAACGC
  TGCAGAATTT CCTGGACACA CTCCGTGTTG CCATAGTTGC AGGCTTCATG CAAAGGCGTC
  CAGCCAGCAT TGTCTAAATT AGAAATTAAG GCAAGTTTTA AAACAGCAGA AGTACTGTTG
  GTTGCAAAGT ATTGATATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16380612	13.073.288	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C		C	C	C	C	C	C	C	C	C	C
ss39104160	mCV24822568	ABI	CRAMUS_MOUSE	f	SNP	T	T	C						C											C
ss49119529	NES12425967	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C		C							C					C		C			C					C		C			T				C									C
ss144698289	ENSMUSSNP6832269	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C																	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13481890					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49119529	NES12425967	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77194690 () rs orientation: forward

Symbol	Name	Function Class
D13Mit231	DNA segment, Chr 13, Massachusetts Institute of Technology 231	1172 bp proximal
Rr273760	regulatory region 273760	890 bp distal
Rr281681	regulatory region 281681	110 bp proximal
Slf1	SMC5-SMC6 complex localization factor 1	within coordinates
Tssr123272	transcription start site region 123272	834 bp downstream
Tssr123273	transcription start site region 123273	1054 bp downstream