GAAGG CCTTGCCGCT GTCGCTCCCG Y AGATGCAGGC GTGCCCGGGA CCGGG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeJ |
C57BL/6J |
C57BL/10J |
C57BLKS/J |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
DDK/Pas |
FVB/NJ |
I/LnJ |
JF1/Ms |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MAI/Pas |
MOLF/EiJ |
MSM/Ms |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZW/LacJ |
PERA/EiJ |
PL/J |
PWD/Ph |
RIIIS/J |
SEA/GnJ |
SEG/Pas |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss16380708 | 13.095.071 | TWGNF | TWGNF-Mouse-2 | f | SNP | T | T | C | C | C | C | C | C | T | T | T | T | T | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C | C | C | C | C | C | C |
ss39097593 | mCV24334924 | ABI | CRAMUS_MOUSE | f | SNP | T | C | T | C | ||||||||||||||||||||||||||||||||||||||||||||
ss145056199 | ENSMUSSNP4057116 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | C | ||||||||||||||||||||||||||||||||||||||||||||||
ss324500814 | CHEV_13_99462341 | CHEVERUD | SCREENING_POP | f | SNP | C | C | ||||||||||||||||||||||||||||||||||||||||||||||
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeJ |
C57BL/6J |
C57BL/10J |
C57BLKS/J |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
DDK/Pas |
FVB/NJ |
I/LnJ |
JF1/Ms |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MAI/Pas |
MOLF/EiJ |
MSM/Ms |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZW/LacJ |
PERA/EiJ |
PL/J |
PWD/Ph |
RIIIS/J |
SEA/GnJ |
SEG/Pas |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
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rs13481967 | SNP | T | T | C | C | C | C | C | C | T | T | T | T | T | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C | C | C | C | C | C | C |
Location: Chr13:98828894 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr281821 | regulatory region 281821 | 906 bp proximal | ||||||
Tmem171 | transmembrane protein 171 | within coordinates | ||||||
Tssr120815 | transcription start site region 120815 | 64 bp downstream | ||||||
Tssr123632 | transcription start site region 123632 | 201 bp upstream | ||||||
Tssr123633 | transcription start site region 123633 | 169 bp upstream | ||||||
Tssr123634 | transcription start site region 123634 | 329 bp downstream | ||||||
Tssr123635 | transcription start site region 123635 | 339 bp downstream | ||||||
Tssr123636 | transcription start site region 123636 | 373 bp downstream | ||||||
Tssr123637 | transcription start site region 123637 | 403 bp downstream | ||||||
Tssr123638 | transcription start site region 123638 | 733 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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