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rs13481967 SNP Detail
Summary
  • ID
    rs13481967
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr13:98828894 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GAAGG CCTTGCCGCT GTCGCTCCCG
    Y
    AGATGCAGGC GTGCCCGGGA CCGGG                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/10J
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
KK/HlJ
LG/J
LP/J
MA/MyJ
MAI/Pas
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss16380708 13.095.071 TWGNF TWGNF-Mouse-2 f SNP T T C C C C C C T T T T T C C C C C C C C C C C C C T C C C C C C C T C C C C T C C C C C C C C
ss39097593 mCV24334924 ABI CRAMUS_MOUSE f SNP T C T C
ss145056199 ENSMUSSNP4057116 ENSEMBL ENSEMBL_Sanger f SNP T C
ss324500814 CHEV_13_99462341 CHEVERUD SCREENING_POP f SNP C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/10J
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
KK/HlJ
LG/J
LP/J
MA/MyJ
MAI/Pas
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs13481967 SNP T T C C C C C C T T T T T C C C C C C C C C C C C C T C C C C C C C T C C C C T C C C C C C C C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:98828894 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr281821 regulatory region 281821 906 bp proximal
Tmem171 transmembrane protein 171 within coordinates
Tssr120815 transcription start site region 120815 64 bp downstream
Tssr123632 transcription start site region 123632 201 bp upstream
Tssr123633 transcription start site region 123633 169 bp upstream
Tssr123634 transcription start site region 123634 329 bp downstream
Tssr123635 transcription start site region 123635 339 bp downstream
Tssr123636 transcription start site region 123636 373 bp downstream
Tssr123637 transcription start site region 123637 403 bp downstream
Tssr123638 transcription start site region 123638 733 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory