rs13482597 SNP Detail

Summary

• ID
  rs13482597
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:59525677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTCAGGA CTAAGTCGTC
  TTTGCCGTGA AACAAACAGC CCAATAAATG CAATTAAACG TTTCTTGTCA CCGTCCCCCT
  CTGGTTATTG CAGCTGGGAC TTGGGTGAAT GAGATTTTGT TGGTGTGTGG GCAGTAGTGT
  CGCCAGCCCT GGGCAGTCAG TGTCACAGTA AGAGACTGGT GGCCTGTACG ATGGATACAC
  W
  GCCCCCACCT GAGGAAGGAG GATGCATACC CTCACTCTCC CATGACAACT TTGTAGAACA
  TGCCAGTCTT CCCCTGAAAC CAGCTCCCCA TTCTGCAATG TGAACTTTGT CAGTTGTGCA
  ACCCTATTAG GATATCATAA GCTCTAGCAT CATGAATATT ATTTGAGACT TTGCATCATC
  CCCTCCGCCC CCGGCACTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16381562	15.059.828	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
ss39383784	mCV22700819	ABI	CRAMUS_MOUSE	f	SNP	T	T	A						A											A
ss147986874	ENSMUSSNP6237870	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A																	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13482597					SNP	T	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:59525677 () rs orientation: forward

Symbol	Name	Function Class
Rr311787	regulatory region 311787	1876 bp distal
Rr390806	regulatory region 390806	within coordinates
Trib1	tribbles pseudokinase 1	within coordinates
Tssr131393	transcription start site region 131393	695 bp downstream
Tssr131394	transcription start site region 131394	405 bp downstream
Tssr134447	transcription start site region 134447	986 bp upstream
Tssr134448	transcription start site region 134448	972 bp upstream
Tssr134449	transcription start site region 134449	914 bp upstream