rs13483008 SNP Detail

Summary

• ID
  rs13483008
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48039703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGGAGAAA GGGAAGAAAG AAGAAGGCAG GGCCCGGGCC
  TGACACATCC ACCGCCTTCC ACAGGGTCCC CCTGAAGAAA ATGAAGAGTA TCCGGGAGAC
  S
  ATGAAGGAAC AAGGTGTCCT CAAAGACTTT CTGAAGAACC ACAAGTATGA CCCTGGCCAG
  AAATACCACT TTGGCAAGTT TGGTGACTAC AGTGTACTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16382372	17.045.988	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	G	G	G	C	C	G	C	C	G	C	C	C	C	G	C	C	C	G	C	C	G	C	C	C	C	C	C	C	C	C	C	C	G	G	C	C	G	C	G	C	C	C	C	C
ss39520154	mCV25139995	ABI	CRAMUS_MOUSE	f	SNP		C	G						C											G
ss325406544	CHEV_17_47865727	CHEVERUD	SCREENING_POP	f	SNP																										C															G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13483008					SNP	C	C	G	G	G	C	C	G	C	C	G	C	C	C	C	G	C	C	C	G	C	C	G	C	C	C	C	C	C	C	C	C	C	C	G	G	C	C	G	C	G	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48039703 () rs orientation: forward

Symbol	Name	Function Class
D17Mit201	DNA segment, Chr 17, Massachusetts Institute of Technology 201	1443 bp distal
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	1931 bp proximal
Tssr5147	transcription start site region 5147	27 bp downstream
Tssr5148	transcription start site region 5148	532 bp downstream
Tssr145003	transcription start site region 145003	1930 bp downstream
Tssr145004	transcription start site region 145004	36 bp downstream
Tssr145005	transcription start site region 145005	15 bp downstream
Tssr145006	transcription start site region 145006	within coordinates
Tssr145007	transcription start site region 145007	18 bp upstream
Tssr145008	transcription start site region 145008	52 bp upstream
Tssr145009	transcription start site region 145009	69 bp upstream
Tssr145010	transcription start site region 145010	472 bp upstream
Tssr145011	transcription start site region 145011	485 bp upstream
Tssr145012	transcription start site region 145012	497 bp upstream
Tssr145013	transcription start site region 145013	516 bp upstream
Tssr145014	transcription start site region 145014	1302 bp upstream
Tssr145015	transcription start site region 145015	1364 bp upstream
Tssr145016	transcription start site region 145016	1375 bp upstream
Tssr145017	transcription start site region 145017	1820 bp upstream
Tssr145018	transcription start site region 145018	1832 bp upstream
Tssr145019	transcription start site region 145019	1863 bp upstream
Tssr145020	transcription start site region 145020	1884 bp upstream
Tssr145021	transcription start site region 145021	1910 bp upstream
Tssr145022	transcription start site region 145022	1942 bp upstream
Tssr145023	transcription start site region 145023	1969 bp upstream
Tssr148459	transcription start site region 148459	18 bp downstream
Tssr148460	transcription start site region 148460	39 bp downstream
Tssr148461	transcription start site region 148461	78 bp downstream
Tssr148462	transcription start site region 148462	97 bp downstream
Tssr148463	transcription start site region 148463	500 bp downstream
Tssr148464	transcription start site region 148464	578 bp downstream
Tssr148465	transcription start site region 148465	1343 bp downstream
Tssr148466	transcription start site region 148466	1356 bp downstream
Tssr148467	transcription start site region 148467	1851 bp downstream
Tssr148468	transcription start site region 148468	1882 bp downstream
Tssr148469	transcription start site region 148469	1972 bp downstream