rs13483196 SNP Detail

Summary

• ID
  rs13483196
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:7866920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATTTGCCC ATATGCACTT TTGGAGTGAG
  GAAAATAACT AACTTCATTC TTACATGGCT GTTGTTTTTC CAGCCAAGTT CAGCTGTCCT
  GTGGAAGGTA TACATTGTAG AGAATTAACA GAATTGTACC ATAGGCCACT AAGGAGGAAA
  R
  GAAGGGAGAG TATTTTCCAG TGACTTATCT CAGCTAGGCA ATGGAGTGTT TATTTCTAGT
  TTACAggtgg tagggactga gctcagtttc cctggaagaa cagctagagc tctagaccac
  taagccttat tcatctcctg ccACAGGCAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16382598	18.007.845	TWGNF	TWGNF-Mouse-2	f	SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
ss39636505	mCV25025753	ABI	CRAMUS_MOUSE	f	SNP	A	G						G
ss146585444	ENSMUSSNP5625180	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss325523061	CHEV_18_7866918	CHEVERUD	SCREENING_POP	f	SNP																							A																G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13483196					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:7866920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9688	CpG island 9688	1516 bp proximal
Gm9993	predicted gene 9993	1098 bp downstream
Rr533616	regulatory region 533616	1422 bp proximal
Tssr149978	transcription start site region 149978	1553 bp upstream
Tssr149979	transcription start site region 149979	1903 bp upstream
Tssr149980	transcription start site region 149980	1957 bp upstream
Wac	WW domain containing adaptor with coiled-coil	1912 bp upstream