rs13483508 SNP Detail

Summary

• ID
  rs13483508
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5845631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCC AAGGAAACAG GGAAGGCCTC
  R
  CTAATCGGAG AAGCTGAGGT AGATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16383003	19.004.878	TWGNF	TWGNF-Mouse-2	f	SNP	A	A	G	G	G	A	G	G	A	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G
ss44935626	mCV23055285	ABI	CRAMUS_MOUSE	f	SNP		A	G						A											G
ss146013923	ENSMUSSNP419989	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G																	G
ss325717517	CHEV_19_5795603	CHEVERUD	SCREENING_POP	f	SNP																										G																	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13483508					SNP	A	A	G	G	G	A	G	G	A	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5845631 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	87 bp downstream
Mascrna	Malat1-associated small cytoplasmic RNA	321 bp downstream
Rr543159	regulatory region 543159	1958 bp distal
Rr543160	regulatory region 543160	1185 bp distal
Rr543161	regulatory region 543161	1851 bp proximal
Tssr5415	transcription start site region 5415	1231 bp downstream
Tssr5416	transcription start site region 5416	1707 bp downstream
Tssr157645	transcription start site region 157645	750 bp downstream
Tssr157646	transcription start site region 157646	780 bp downstream
Tssr157647	transcription start site region 157647	942 bp downstream
Tssr157648	transcription start site region 157648	1108 bp downstream
Tssr157649	transcription start site region 157649	1208 bp downstream
Tssr157650	transcription start site region 157650	1267 bp downstream
Tssr157651	transcription start site region 157651	1321 bp downstream
Tssr157652	transcription start site region 157652	1458 bp downstream
Tssr157653	transcription start site region 157653	1575 bp downstream
Tssr157654	transcription start site region 157654	1618 bp downstream
Tssr157655	transcription start site region 157655	1655 bp downstream
Tssr157656	transcription start site region 157656	1685 bp downstream
Tssr157657	transcription start site region 157657	1807 bp downstream
Tssr157658	transcription start site region 157658	1859 bp downstream
Tssr157659	transcription start site region 157659	1962 bp downstream