rs13483521 SNP Detail

Summary

• ID
  rs13483521
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8931284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCC GGCGAAATAG GCTGTAGGCG
  K
  TCCGTACCGG AGAGTGGCTA TGGCG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16383018	19.008.097	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	G	T	G	T	T	G	T	T	T	G	G	G	G	T	G	G	T	T	G	T	T	G	G	G	T	T	T	G	G	T	T	T	T	G	T	G		T	G	G	T	T	G	T	T	G	G
ss39669192	mCV24151337	ABI	CRAMUS_MOUSE	f	SNP	T	T	G						T											T
ss50609122	NES13644057	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T		G							G					T		T			G					G		T			T				G									G
ss146030829	ENSMUSSNP4323515	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G																	T
ss325718262	CHEV_19_9028410	CHEVERUD	SCREENING_POP	f	SNP																										G																		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13483521					SNP	T	T	G	T	G	T	T	G	T	T	T	G	G	G	G	T	G	G	T	T	G	T	T	G	G	G	T	T	T	G	G	T	T	T	T	G	T	G	G	T	G	G	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50609122	NES13644057	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8931284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10588	CpG island 10588	within coordinates
Gm59132	predicted gene, 59132	within coordinates
Mta2	metastasis-associated gene family, member 2	1625 bp downstream
Rr363780	regulatory region 363780	within coordinates
Rr405849	regulatory region 405849	54 bp downstream
Tssr154900	transcription start site region 154900	1835 bp downstream
Tssr154901	transcription start site region 154901	64 bp downstream
Tssr154902	transcription start site region 154902	36 bp downstream
Tssr154903	transcription start site region 154903	within coordinates
Tssr154904	transcription start site region 154904	57 bp upstream
Tut1	terminal uridylyl transferase 1, U6 snRNA-specific	within coordinates