rs13483522 SNP Detail

Summary

• ID
  rs13483522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9112909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGG CGGCGCCACG GTGCCGCGGG
  Y
  GCACGCCATG ATGTCAAACT GGCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16383019	19.008.279	TWGNF	TWGNF-Mouse-2	f	SNP		T	C	T	C	T	C	C	T	T	T	C	C	T	T	C	C	T	C	T	T	T	C	C	T	T	T	C	C	C	C	T	C	T	C	T	C	C	C	C	C	T	T
ss39674976	mCV24728890	ABI	CRAMUS_MOUSE	f	SNP	C	T					C										C
ss146031284	ENSMUSSNP6449754	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T															C
ss325718349	CHEV_19_9210035	CHEVERUD	SCREENING_POP	f	SNP																						T																	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13483522					SNP	C	T	C	T	C	T	C	C	T	T	T	C	C	T	T	C	C	T	C	T	T	T	C	C	T	T	T	C	C	C	C	T	C	T	C	T	C	C	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9112909 () rs orientation: forward

Symbol	Name	Function Class
Asrgl1	asparaginase like 1	within coordinates
Cpgi10592	CpG island 10592	within coordinates
Rr362940	regulatory region 362940	1622 bp proximal
Rr363785	regulatory region 363785	within coordinates
Tssr154969	transcription start site region 154969	385 bp downstream
Tssr158099	transcription start site region 158099	494 bp upstream
Tssr158100	transcription start site region 158100	11 bp downstream
Tssr158101	transcription start site region 158101	58 bp downstream