rs13484248 SNP Detail

Summary

• ID
  rs13484248
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53869708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAGAAATG TCAAAGTCAC CCAAGAATAA AGTGTAAGGG
  AATGAGGAAT TAGGTTTCCA TCGCTCTTCA GAGTAACCTT ACATGCCTTA CCTAACCTCT
  Y
  CAGTGATCTT GTCCCAGAAT ACTGTGGAAA AGACTCCATA CCAACAAGTC ACCCTGGATA
  GATCTGCAGA CACATGGGTC CTTAAGAAGT AACAATCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss20399515	PS02176868	PERLEGEN	MM_PANEL	f	SNP		T	T	T	T	C	T	T		T	T	C	C				T		T	T		C
ss37208453	NES08438004	PERLEGEN	MM_PANEL2	f	SNP	T			T	T		T		T	T		C	C	T	T	T		T		T	C		C
ss132135325	ENSMUSSNP3147251	ENSEMBL	ENSEMBL_Sanger	f	SNP		T											C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs13484248					SNP	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37208453	NES08438004	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53869708 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	539 bp proximal
Gm30927	predicted gene, 30927	1149 bp upstream
Rr447212	regulatory region 447212	1000 bp distal
Rr447213	regulatory region 447213	365 bp proximal
Rr447214	regulatory region 447214	1038 bp proximal
Rr447215	regulatory region 447215	1440 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	1143 bp upstream
Tssr101465	transcription start site region 101465	1162 bp upstream
Tssr107965	transcription start site region 107965	1005 bp downstream
Tssr107966	transcription start site region 107966	1067 bp downstream
Tssr107967	transcription start site region 107967	1389 bp downstream
Tssr107968	transcription start site region 107968	1414 bp downstream
Tssr107969	transcription start site region 107969	1472 bp downstream