rs13486027 SNP Detail

Summary

• ID
  rs13486027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54242293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCACTGA GACCACTGAG
  ATACCCCACC CTATAAGCAC TGTTGTTTCA ATTTTAATAT GCAAATCAAT TGTGCAGGTA
  AATTAATATA GTAATGCAAG GAATGTTACT GATGATAATA TTGCTTATCA GTATTAAAAC
  ATTTGCTGTC AATATCATTT AGGTCACGGT CAGAAAAACC AAAAAGATAT CCTATGGTAT
  Y
  AGAATTACTG ACTCTATTCT ATCCTGTGCA TATTTGTTTA TATAATTAAA CCTTAAATCA
  CTTTTAAAGA AAATAACCAA AAACTTTAAA ACAGTTCTTC ATGAATAAAT TGGAAGTCGT
  TTGGAAGTTC TGGGAAATGT TTGGGCTCAC AGAATTGGGA TCAATCAAGT TAGATTAGCA
  CCCTCCAAGA CGTGCAGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	NZB/BlNJ
ss20401339	PS02178205	PERLEGEN	MM_PANEL	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	NZB/BlNJ
rs13486027					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54242293 () rs orientation: forward

Symbol	Name	Function Class
Acsl6	acyl-CoA synthetase long-chain family member 6	within coordinates
Gm12224	predicted gene 12224	within coordinates
Rr246748	regulatory region 246748	1707 bp proximal
Tssr107987	transcription start site region 107987	1780 bp downstream
Tssr107988	transcription start site region 107988	1819 bp downstream
Tssr107989	transcription start site region 107989	1991 bp downstream