rs13486744 SNP Detail

Summary

• ID
  rs13486744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134681811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCCCAT TTTCATCCCT
  GATTGAAGCA AGATCTCTGA GGGTTGATTG GGCTCCAGGT CCAGAGGGAT TGGTTGTTTC
  CTCCTGTGGT CCAGAGGTTA ATACACAGGG ACAGGGATGG TACATCATTG GACCACATCC
  TGGGCTGCCT CCCTGGCTGG GGGAGGAGAG CGGCCCACCA GTCATTCTGC AGATGGTTAC
  Y
  TTGCCAGAAG GATTGGTAAC ATGAACAAAG GTATCACTGA AGGATGCAAG AAGGTGGCAG
  ATGCCGAATA CATTCTCTCC TTCAGCTACT TGAGGGCTGA GGCCCATTAA TGACTTTGTC
  TATACCTTCC CTGTGCAAGG TGACATTCTG TGCATTGCTT TCAGACTCCT ACACTAGATA
  TCCAGATATT CCATTCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss20402063	PS02179422	PERLEGEN	MM_PANEL	f	SNP		C	C	C	C	C	C	C			C	T	C				C		C	C
ss60845246	NES16004337	PERLEGEN	MM_PANEL2	f	SNP	C			C	C		C		C	C		T	C	C	C	T		C		C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13486744					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60845246	NES16004337	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134681811 () rs orientation: forward

Symbol	Name	Function Class
Rr622113	regulatory region 622113	1726 bp distal
Rr622114	regulatory region 622114	1815 bp distal
Rr622115	regulatory region 622115	1628 bp distal
Rr622116	regulatory region 622116	435 bp distal
Rr622117	regulatory region 622117	1437 bp proximal
Rr622118	regulatory region 622118	1902 bp proximal