rs13486747 SNP Detail

Summary

• ID
  rs13486747
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134684935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTCCTGG AACTCACTAT
  GTAGACCAGG CTGGTCTCAA ACTCAGAAAT CGCCTGCTCT GCTTCCCAAG TGCTGGGATT
  AAAGGCGTGC GCCACTACGC CCAGCTCGCT CTCTCTTCTT GCTTGCTCCG TTGGAGCTCT
  CAGACACACA CACGAGGATG CAAGCCCCGC GTGGGGAGCA CAGAATTGAT TTTATTGTTC
  Y
  GAGTTTGGGT TCATTCCTGT CATGATCACT GGGCCGAGGC AAGGAGACCT TGCCTCTTTC
  AGTCTTGGTC CCGCGGGGGT CTGCTCAAAT TCTCTTCCAT ATTCAAAGTG CACTGGGAAA
  GCTTCACAGT TTAATATGCC CTAGATGGTC AACTGAAGCG GAGTGAAGAC ATGGCCCTCC
  CACCCCCACC CACCTAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss20402066	PS02179427	PERLEGEN	MM_PANEL	f	SNP		T	T	T	T	T	T			T	C	T				T		T	T
ss60845240	NES16004315	PERLEGEN	MM_PANEL2	f	SNP	T			T	T		T	T	T		C	T	T	T	T		T		T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13486747					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60845240	NES16004315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134684935 () rs orientation: forward

Symbol	Name	Function Class
Limk1	LIM domain kinase 1	within coordinates
Tssr53665	transcription start site region 53665	1452 bp downstream