rs13486749 SNP Detail

Summary

• ID
  rs13486749
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134688365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCACCCTG GCCAGTGTGC
  TTACCTGACA CAGAGAAGCC CTGGGTTCTA TCCCAGCACC CCACAGACTC AGCACGGGGT
  GGCTCACTCC TACAATCCTA ACTAACACTC TGCAGCCAGA GGCAGGAGGA CAGGAGCACA
  AGGTCATCCT TGGCTAAATA GTGAGTTGGA GGCTAGCCTG TGCTAAATGA GAAAAGGGCC
  H
  GCTAGGTGAC GATTTTGGAG TTCAGCCCTA GGACCCACAT GAGGGCAAAC AACTTCCTCC
  TACAAGGTGT CTCCTGATGT GCGTGTGTGC AGGCACACAG TGTGAAAACC ACACCCAACA
  CCCACCCGAG ACTAAACAAA GGAGTGTGGT AATGTAAAGA TGAGGTGGAG GCTGGAGGGA
  GGCGGCCACA AGCCCAGAAA                                            
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	CAST/EiJ	NZB/BlNJ	NZW/LacJ
ss20402068	PS02179430	PERLEGEN	MM_PANEL	f	SNP	C	C	A	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	CAST/EiJ	NZB/BlNJ	NZW/LacJ
rs13486749					SNP	C	C	A	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134688365 () rs orientation: forward

Symbol	Name	Function Class
Limk1	LIM domain kinase 1	within coordinates
Tssr53665	transcription start site region 53665	1929 bp upstream