rs13486750 SNP Detail

Summary

• ID
  rs13486750
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134688411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATCCCAG CACCCCACAG
  ACTCAGCACG GGGTGGCTCA CTCCTACAAT CCTAACTAAC ACTCTGCAGC CAGAGGCAGG
  AGGACAGGAG CACAAGGTCA TCCTTGGCTA AATAGTGAGT TGGAGGCTAG CCTGTGCTAA
  ATGAGAAAAG GGCCCGCTAG GTGACGATTT TGGAGTTCAG CCCTAGGACC CACATGAGGG
  M
  AAACAACTTC CTCCTACAAG GTGTCTCCTG ATGTGCGTGT GTGCAGGCAC ACAGTGTGAA
  AACCACACCC AACACCCACC CGAGACTAAA CAAAGGAGTG TGGTAATGTA AAGATGAGGT
  GGAGGCTGGA GGGAGGCGGC CACAAGCCCA GAAAACCCTA GCTGACCCTT GTCAACTGGA
  GGGAAACAAG AGAAGGGGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ
ss20402069	PS02179432	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ
rs13486750					SNP	C	C	C	C	C	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134688411 () rs orientation: forward

Symbol	Name	Function Class
Limk1	LIM domain kinase 1	within coordinates
Tssr53665	transcription start site region 53665	1975 bp upstream