rs13487255 SNP Detail

Summary

• ID
  rs13487255
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134972247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTACGCTAG GCTAGCCCCC
  CACTCAGGAA GGTACATCCC CGCACCTTGG CGAAAGGACA GTGTTGTTTG TTTTGTTTTG
  TTAGGCTTGG TTGGTTTTAA AAAGGGTTAA ACTATGTAGC TCTGGTAGAC CTAGAACTCA
  CTATGTAGAC CAGGCTGGCC TTGAACTCAC AGAAGTCTCT TCCTGCCTCA CAGCCACCTG
  R
  TTTTTCAATG TTTAACTCAG AGGAGATTGG GGCTGCTCAA CAATAGAGCC CTTGTCTAAC
  ATGGGAACCC CTGGATTTGA TCCCCAAGGA CCACAGGGAG TAAAAAAATG AACTATAAAG
  AGAAAATAGA ACAGCTTGGG TCTGTTATGA CAGTCTCAGG TAGCCCAGCC TGGCCTCAAA
  CTGACTATGT AATGAAAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20402576	PS02180288	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487255					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134972247 () rs orientation: forward

Symbol	Name	Function Class
Cldn4	claudin 4	1730 bp downstream
Mettl27	methyltransferase like 27	756 bp downstream
Rr124500	regulatory region 124500	953 bp proximal
Rr367963	regulatory region 367963	1206 bp downstream
Tssr49107	transcription start site region 49107	1733 bp upstream
Tssr49108	transcription start site region 49108	1875 bp upstream
Tssr53699	transcription start site region 53699	1858 bp downstream