rs13487256 SNP Detail

Summary

• ID
  rs13487256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134972329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTTGGTT GGTTTTAAAA
  AGGGTTAAAC TATGTAGCTC TGGTAGACCT AGAACTCACT ATGTAGACCA GGCTGGCCTT
  GAACTCACAG AAGTCTCTTC CTGCCTCACA GCCACCTGGT TTTTCAATGT TTAACTCAGA
  GGAGATTGGG GCTGCTCAAC AATAGAGCCC TTGTCTAACA TGGGAACCCC TGGATTTGAT
  Y
  CCCAAGGACC ACAGGGAGTA AAAAAATGAA CTATAAAGAG AAAATAGAAC AGCTTGGGTC
  TGTTATGACA GTCTCAGGTA GCCCAGCCTG GCCTCAAACT GACTATGTAA TGAAAGATGG
  TCTTGAACTC GTGATCCTCC CATCTCTACC TCCTGAGTGC TGGGATCCTA TCACAAGCCC
  ACTCTCCGGA CTTGAAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ
ss20402577	PS02180290	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ
rs13487256					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134972329 () rs orientation: forward

Symbol	Name	Function Class
Cldn4	claudin 4	1648 bp downstream
Mettl27	methyltransferase like 27	838 bp downstream
Rr124500	regulatory region 124500	871 bp proximal
Rr367963	regulatory region 367963	1288 bp downstream
Tssr49107	transcription start site region 49107	1651 bp upstream
Tssr49108	transcription start site region 49108	1793 bp upstream
Tssr53699	transcription start site region 53699	1776 bp downstream