rs13487258 SNP Detail

Summary

• ID
  rs13487258
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134972728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCTGATA CCTTCATGAG
  AACTTGGCTA TCCCCACAAA ATCAAGAAGT GGTAAGTGGG GTGACGAGAG GGCTGAGCCG
  GTAAAAAGTG AGCTGCGTAA AAGTGCAGTG GTGTGAGTCC CCCCCCCCAA CCCCACATAA
  AGGTGGGAGG GGAGAGTCAC CTCCACAAAG TTGTCTTCTG GTCTCAGTTC TGGAGCTGAG
  Y
  CACAGTTGCG CATGAACAGG GAAGGGTTCT GTGTGGATGG AGCTCAGAGC TAGAAAGCTG
  GTGTACTTGA GTCCCATCCC AGCTCTGAAT AAATCTGTGG TGTCCCTGCC CATAATCAGA
  GCACCTGAGA GGGGGAGAAA GGAGAAGGAG AAAACTCAAA ACCATCCTTT GTGATGGATC
  AGGTTTGAGT TCAGCCAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20402579	PS02180293	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487258					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134972728 () rs orientation: forward

Symbol	Name	Function Class
Cldn4	claudin 4	1249 bp downstream
Mettl27	methyltransferase like 27	1237 bp downstream
Rr124500	regulatory region 124500	472 bp proximal
Rr367963	regulatory region 367963	1687 bp downstream
Tssr49107	transcription start site region 49107	1252 bp upstream
Tssr49108	transcription start site region 49108	1394 bp upstream
Tssr53699	transcription start site region 53699	1377 bp downstream
Tssr53700	transcription start site region 53700	1942 bp downstream