rs13487260 SNP Detail

Summary

• ID
  rs13487260
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134973399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAGGTGT GGGTTTAAGG
  ACTCTCAGGA CCTTGAGCAT TCCAGGGCTG TGGGAGGACT CCCTAGGGAA GAGGCCACAG
  CCCGGACCTG TAAGACCAGC AAGGCTTCAA GAGTGGGAAA AGGACATTCC TTAGAGAAGG
  TGACTGCTAT AACGTGGCCT GTGGAAGATA AGCAGGCCAG CCTGTTTGCT CAGAGAAAGG
  R
  AGGCCAGAAA GGAAGAGGCA GGGGAATTAG CCCTTGTTGT TCCTGTCATC TGTTGTCCCT
  CCCAGAGTCC CCCAGCCCCA CCCCACCCCA CCCCCACCCC CAGTCCTGGG CATACACTGG
  GCCCTAGATA CAGGGTTTCC CCTCTAACAA ATGAAGAGAT TGTCATCATG GTAATCTCAT
  CAAAACTGAG GCAGGAGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	CAST/EiJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20402581	PS02180297	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	CAST/EiJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487260					SNP	A	A	A	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134973399 () rs orientation: forward

Symbol	Name	Function Class
Cldn4	claudin 4	578 bp downstream
Cpgi16731	CpG island 16731	1540 bp proximal
Mettl27	methyltransferase like 27	1908 bp downstream
Rr124500	regulatory region 124500	within coordinates
Tssr49107	transcription start site region 49107	581 bp upstream
Tssr49108	transcription start site region 49108	723 bp upstream
Tssr49109	transcription start site region 49109	1574 bp upstream
Tssr53699	transcription start site region 53699	706 bp downstream
Tssr53700	transcription start site region 53700	1271 bp downstream
Tssr53701	transcription start site region 53701	1476 bp downstream
Tssr53702	transcription start site region 53702	1710 bp downstream
Tssr53703	transcription start site region 53703	1894 bp downstream