rs13487261 SNP Detail

Summary

• ID
  rs13487261
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134973887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGAGGAA GTTCTCATTT
  TTACAGTGAG AACTCCTGAA TCACTTTCTG AGACAGGGCT TCCTGTAGAC CAGGCTAGCC
  TTGAACCTAC AGCTTAGTGT GTGTGGGGGT GGGGGGTGGG GGGTGACCTT CATTTGGGGA
  TGAGTGTGGG ACACGGGGCC TCTGGCGTGC CAGGCACACT CTCCACCAAC AGCTCCACCA
  M
  TTCATCTTAT TAGAACATCA AGGTCTCCTG TGAACCCTTA GCCGCCCCTC CAGCCCAGTC
  CCATCCACAG ATAGAGAACA GCCCAAACCT TTCCTGTATG CAGGTGCCAT TTATTGTAGA
  AAATAATAAT AATTACAGCT GTGAACAGAC CTTAAATTAC AAAACAAGAA ACCACAGAGA
  AGGCAGGGGA GTCCAGGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20402582	PS02180299	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487261					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134973887 () rs orientation: forward

Symbol	Name	Function Class
Cldn4	claudin 4	90 bp downstream
Cpgi16731	CpG island 16731	1052 bp proximal
Rr124500	regulatory region 124500	within coordinates
Tssr49107	transcription start site region 49107	93 bp upstream
Tssr49108	transcription start site region 49108	235 bp upstream
Tssr49109	transcription start site region 49109	1086 bp upstream
Tssr53699	transcription start site region 53699	218 bp downstream
Tssr53700	transcription start site region 53700	783 bp downstream
Tssr53701	transcription start site region 53701	988 bp downstream
Tssr53702	transcription start site region 53702	1222 bp downstream
Tssr53703	transcription start site region 53703	1406 bp downstream
Tssr53704	transcription start site region 53704	1863 bp downstream
Tssr53705	transcription start site region 53705	1884 bp downstream