rs13487262 SNP Detail

Summary

• ID
  rs13487262
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134974150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCACAGAT AGAGAACAGC
  CCAAACCTTT CCTGTATGCA GGTGCCATTT ATTGTAGAAA ATAATAATAA TTACAGCTGT
  GAACAGACCT TAAATTACAA AACAAGAAAC CACAGAGAAG GCAGGGGAGT CCAGGAGACT
  CCCTGGTACA ATGCCATCAC CCCCCCCCCC CCCCCCCGTA CCTTCCTTCC GCAGACTGGC
  Y
  GGTGTCCTTG AAATGGGCAA AGGGAGGGAA CTCAGAGGGG CCAACTCAAG AGGCCCAGGG
  TCCTTCTGAA GAGGGAGGGG GCGCACAGTG ATCAGAACAT TAGCAAGACA GTGCGGAAAA
  GGGGTGGGGA CACACTGGGC TGCTTCTAGG TCCCCAGCCC TCCCCAAACC AGTTTAATCC
  ACCTCCACCC TTCTTCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20402583	PS02180300	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487262					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134974150 () rs orientation: forward

Symbol	Name	Function Class
Cldn4	claudin 4	within coordinates
Cpgi16731	CpG island 16731	789 bp proximal
Rr124500	regulatory region 124500	within coordinates
Tssr49107	transcription start site region 49107	166 bp downstream
Tssr49108	transcription start site region 49108	within coordinates
Tssr49109	transcription start site region 49109	823 bp upstream
Tssr53699	transcription start site region 53699	38 bp upstream
Tssr53700	transcription start site region 53700	520 bp downstream
Tssr53701	transcription start site region 53701	725 bp downstream
Tssr53702	transcription start site region 53702	959 bp downstream
Tssr53703	transcription start site region 53703	1143 bp downstream
Tssr53704	transcription start site region 53704	1600 bp downstream
Tssr53705	transcription start site region 53705	1621 bp downstream