rs13487263 SNP Detail

Summary

• ID
  rs13487263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134974631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTCCATG GCAGAGCCCA
  CCGGCTCTCA ATGGCCCCTC AGTCAGTCAC TCAGCACACC ATGACTTGGG GTAGGACCAG
  CTGTGCTCGG AAACACGGGG CGTAATGGCA AGAGTAGCGC TGGAGTAACG TGTAGGCTGA
  GTGAGGGGGA TAGAGAAAGG ACAGTGGACG TTTGCTAACA TGAGGACATC CACTCCAGAG
  Y
  CCAAAGTCAC AGCTGAGCTA CCCCGGCCAG CAGGACCCAG CTTGCGCCTC TACTGCCCTT
  CCCAGCTGCT TCTGCCTTCA GCCCCATATC CACCAGCAAT TTGGATGTAA GCAGCAAGAT
  ATTTTTACAT CCATTCTTGC CGGCCGTAAG GAGCCATGTG GAGCAGCCCA AGAGCTACGG
  GCTAGTAACT TTGCACAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20402584	PS02180302	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487263					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134974631 () rs orientation: forward

Symbol	Name	Function Class
Cldn4	claudin 4	within coordinates
Cpgi16731	CpG island 16731	308 bp proximal
Rr124500	regulatory region 124500	within coordinates
Tssr49107	transcription start site region 49107	647 bp downstream
Tssr49108	transcription start site region 49108	470 bp downstream
Tssr49109	transcription start site region 49109	342 bp upstream
Tssr53699	transcription start site region 53699	519 bp upstream
Tssr53700	transcription start site region 53700	39 bp downstream
Tssr53701	transcription start site region 53701	244 bp downstream
Tssr53702	transcription start site region 53702	478 bp downstream
Tssr53703	transcription start site region 53703	662 bp downstream
Tssr53704	transcription start site region 53704	1119 bp downstream
Tssr53705	transcription start site region 53705	1140 bp downstream