rs13487264 SNP Detail

Summary

• ID
  rs13487264
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134975003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTACGGG CTAGTAACTT
  TGCACAGTCC GGGTTTGCCT GTCCCCAGCA AGCAGTTAGT GGCCCATAGC AGGGCAGGTC
  CTGGAGAATG TGAGGGGCCA CAGGCTGTTA TGAGCTCAAT CCGAAAAAAA GATAACAAAG
  GCAATGTGGA CAGAGTGGCC CACCTTACAC ATAGTTGCTG GCGGGGACAG AGCGGGCGGC
  R
  GAGTACTTGG CCGAGTAGGG CTTGTCGTTG CTACGAGGTG GGCAACTGCA GCAGAGGAGG
  CCTCCTCCCA GGAGCAGCAG CCCGGAGGCC GCCCAGCCGA CGTAAAGCGA GGCCCCCATT
  TCCCTCTTCT GCCCGGAAGC CACCATAGGG TTGTAGAAGT CGCGGATGAC GTTGTGAGCG
  GTCCAGGACA CGGGCACCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20402585	PS02180304	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487264					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134975003 () rs orientation: forward

Symbol	Name	Function Class
Cldn4	claudin 4	within coordinates
Cpgi16731	CpG island 16731	within coordinates
Rr124500	regulatory region 124500	within coordinates
Tssr49107	transcription start site region 49107	1019 bp downstream
Tssr49108	transcription start site region 49108	842 bp downstream
Tssr49109	transcription start site region 49109	within coordinates
Tssr53699	transcription start site region 53699	891 bp upstream
Tssr53700	transcription start site region 53700	313 bp upstream
Tssr53701	transcription start site region 53701	118 bp upstream
Tssr53702	transcription start site region 53702	106 bp downstream
Tssr53703	transcription start site region 53703	290 bp downstream
Tssr53704	transcription start site region 53704	747 bp downstream
Tssr53705	transcription start site region 53705	768 bp downstream