rs13487265 SNP Detail

Summary

• ID
  rs13487265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134975685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGCCGAT GAAGGCGGTC
  ACCCGCCACA TGGGGAGCGC ACAACTCAGG ATGATCCCCA GCCAGCCCAG GACTGCCAAG
  GAGATTCCCA GGACCTGTAG TCCCATAGAC GCCATCGCTC AGCCTCTGCA GGGGTCAAAG
  TCGGTGACCA CAAAAAGTAC CTCTCTCTCT CTCTCTCTGG AGTCAGAGGG CTGAGAAAGT
  Y
  TTTTTCGGTG AGCCTCAGGG ACACAAAGCC AGCTGAGTCC GATGCACCAG CTACCAAGCG
  CGAACACTGC AGCTCTTTCC TGCCTGCACC TGCAACAAGA AAGGGCGGCC ACAGGTGCTG
  CAGTTAAAGC TCCTAGAGGA GGGGCGGAGG CAGAGGGAGG GGTTTCAGTC CCGGAGGCCT
  CCCTCGGGAC CAGTTTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20402586	PS02180305	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487265					SNP	T	T	T	T	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134975685 () rs orientation: forward

Symbol	Name	Function Class
Cldn4	claudin 4	within coordinates
Cpgi16731	CpG island 16731	59 bp distal
Rr124500	regulatory region 124500	within coordinates
Tssr49107	transcription start site region 49107	1701 bp downstream
Tssr49108	transcription start site region 49108	1524 bp downstream
Tssr49109	transcription start site region 49109	650 bp downstream
Tssr53699	transcription start site region 53699	1573 bp upstream
Tssr53700	transcription start site region 53700	995 bp upstream
Tssr53701	transcription start site region 53701	800 bp upstream
Tssr53702	transcription start site region 53702	560 bp upstream
Tssr53703	transcription start site region 53703	388 bp upstream
Tssr53704	transcription start site region 53704	65 bp downstream
Tssr53705	transcription start site region 53705	86 bp downstream