rs13487381 SNP Detail

Summary

• ID
  rs13487381
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135040060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGTTGGC CACAGCATGG
  GAGGAAAGAC AGCCATGCTC CTGGCACTGC AGAGGGTAAG CTACACCTAT CTGGGTCCTC
  TTAATGCACT CTAAGCCCAT TGATAACGTG GGACTCATCC ACACTTTGGA TGGCCAGGTC
  CAGAAACTCT GCTGGCGGCT CAGAGTTTGT CTGGGACCTG CTCTGGTCTG ATTCTGTCTC
  S
  CAGCCAGATG TTGTGGAACG ATTGGTTGTT GTAGACATAA GCCCGGTAGG AACCACACCT
  GGATCACACA TTGGAGCCTT CATAGCAGCC ATGAAGGCTG TTGAGATCCC AGAGAAGGTG
  CCGCACTCCC AAGCCCGAAA ACTGGCGGAT AAGCAGCTTA GTTCGGTTGT CAAGGTGACG
  CACGCCCCCC CCCCCTTTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20402702	PS02180504	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487381					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135040060 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	within coordinates
Abhd11os	abhydrolase domain containing 11, opposite strand	980 bp downstream
Cpgi16736	CpG island 16736	1032 bp distal
Gm43372	predicted gene 43372	1098 bp upstream
Gm73578	predicted gene, 73578	781 bp downstream
Rr110217	regulatory region 110217	1541 bp proximal
Rr110218	regulatory region 110218	1941 bp proximal
Rr124503	regulatory region 124503	59 bp distal
Rr124504	regulatory region 124504	540 bp proximal
Tssr1661	transcription start site region 1661	1174 bp downstream
Tssr1662	transcription start site region 1662	1521 bp downstream
Tssr1663	transcription start site region 1663	1953 bp downstream
Tssr1664	transcription start site region 1664	1971 bp downstream
Tssr49120	transcription start site region 49120	1889 bp downstream
Tssr49121	transcription start site region 49121	1753 bp downstream
Tssr49122	transcription start site region 49122	1507 bp downstream
Tssr49123	transcription start site region 49123	1480 bp downstream
Tssr49124	transcription start site region 49124	1441 bp downstream
Tssr49125	transcription start site region 49125	1430 bp downstream
Tssr49126	transcription start site region 49126	1361 bp downstream
Tssr49127	transcription start site region 49127	1305 bp downstream
Tssr49128	transcription start site region 49128	1192 bp downstream
Tssr53717	transcription start site region 53717	1540 bp downstream
Tssr53718	transcription start site region 53718	1556 bp downstream
Tssr53719	transcription start site region 53719	1606 bp downstream
Tssr53720	transcription start site region 53720	1651 bp downstream
Tssr53721	transcription start site region 53721	1908 bp downstream
Tssr53722	transcription start site region 53722	1925 bp downstream