rs13487382 SNP Detail

Summary

• ID
  rs13487382
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:135040509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AACGTGAACC CTACTCGGGG CCAACTCTCT TCCTGCTTGG TGGAAATTCT
  R
  CATATGTACA GTAAGCCGGT GTGGGACCAT AGGAAGGGGC ATGCTTTGCC           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20402703	PS02180506	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13487382					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135040509 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abhd11	abhydrolase domain containing 11			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Abhd11os	abhydrolase domain containing 11, opposite strand			531 bp downstream
Cpgi16736	CpG island 16736			1481 bp distal
Gm43372	predicted gene 43372			1547 bp upstream
Gm73578	predicted gene, 73578			332 bp downstream
Rr622228	regulatory region 622228			1255 bp proximal
Rr622229	regulatory region 622229			1258 bp proximal
Rr622230	regulatory region 622230			1533 bp proximal
Rr622231	regulatory region 622231			1634 bp proximal
Rr622232	regulatory region 622232			1761 bp proximal
Rr622233	regulatory region 622233			1885 bp proximal
Tssr1661	transcription start site region 1661			1623 bp downstream
Tssr1662	transcription start site region 1662			1072 bp downstream
Tssr1663	transcription start site region 1663			1504 bp downstream
Tssr1664	transcription start site region 1664			1522 bp downstream
Tssr49122	transcription start site region 49122			1956 bp downstream
Tssr49123	transcription start site region 49123			1929 bp downstream
Tssr49124	transcription start site region 49124			1890 bp downstream
Tssr49125	transcription start site region 49125			1879 bp downstream
Tssr49126	transcription start site region 49126			1810 bp downstream
Tssr49127	transcription start site region 49127			1754 bp downstream
Tssr49128	transcription start site region 49128			1641 bp downstream
Tssr53717	transcription start site region 53717			1091 bp downstream
Tssr53718	transcription start site region 53718			1107 bp downstream
Tssr53719	transcription start site region 53719			1157 bp downstream
Tssr53720	transcription start site region 53720			1202 bp downstream
Tssr53721	transcription start site region 53721			1459 bp downstream
Tssr53722	transcription start site region 53722			1476 bp downstream